A global database of bird nest traits (2024)

The architecture of a nest weaves the story of avian survival and adaptation. The remarkably diverse nest designs, from simple scrapes on the ground, piles of sticks floating on the water, to intricately woven chambers hanging in trees, reflects various strategies employed by birds to optimize their reproductive success in diverse biotic and abiotic environments^1,2. Certain nest building behaviors, such as placing nests high up in trees or cliff crevices, constructing dome or cavity nests, and suspending nests from drooping twigs, are believed to mitigate the risk of nest predation^3,4,5. Enclosed nests are also thought to provide better thermoregulation properties, offering protection against extreme temperatures^6,7,8. Conversely, the versatility and efficiency of building open-cup nests are believed to facilitate the expansion of ecological niche⁹. Furthermore, nest site selection and the complexity of nest forms can reflect the learning abilities and manipulation skills of bird species^10,11. These findings underscore the potential significance of nest traits in improving our understanding of how birds evolve and adapt to diverse environments.

There is indeed a growing interest in using nest traits to explore the evolutionary mechanisms of other life-history traits and behaviors of bird species^5,12,13,14. Nest traits are also being used to investigate the environmental influences on avian species distribution and community compositions^15,16,17. However, these studies have been limited in their spatial or species coverage due to the absence of comprehensive and structured nest traits information. In addition, inconsistent definitions of nest traits across studies have made it difficult, if not impossible, to integrate information from different studies. To fill this gap, we conducted a thorough characterization of nest structure, nesting site, and attachment approaches for over 9,200 bird species worldwide, compiling them into a structured and readily accessible dataset.

The dataset is distinguished from currently available data^9,12,16,17 in its uniqueness, uniformity, completeness, and cross-referencing capability. Firstly, instead of employing simplistic categorizations such as open/closed or ground/off-ground nests^3,18, our dataset provides detailed information on multiple dimensions of nest characteristics, which exhibit distinct but interdependent evolutionary trajectories throughout the avian phylogeny¹⁹. Thus, including multiple nest traits in research can provide a more holistic context for understanding the avian behaviors. Secondly, by implementing a rigorous procedure and extracting information from reputable data sources, we strived to ensure the quality and consistency of the dataset. Thirdly, we managed to characterize nest traits for the vast majority of bird species, making it applicable to studies in a broad range of geographical and taxonomic scopes. Lastly, we provide multiple species identifiers that enable easy integration with existing information, such as species’ geographic distribution²⁰, phylogeny²¹, and morphological, ecological and life history traits^22,23.

Definition of nest characteristics

We conducted a characterization of bird nests, focusing on three ecologically relevant features: site, structure and attachment, as outlined by Fang et al.¹⁹ The nest site refers to the specific location where nests were constructed, and we classified them into seven distinct types: ground, tree, non-tree vegetation, cliff or bank, underground, termite or ant nest, and waterbody (Table1). In our dataset, the term “tree” indicates a woody plant with an elongated stem and secondary growth. Other tall plants that lack secondary growth, including monocots like palms, banana trees, and bamboos, as well as tree ferns, are classified as non-tree vegetation. Nests constructed within climbing vines or epiphytes growing on trees are also categorized as non-tree vegetation. We considered a site as a waterbody only when the nest was floating on the water surface or built up from the bottom of the water. Nests located in plants emerging from the water (e.g. reeds, mangroves) or on tree branches above the water surface were not included in this particular category.

To describe the nest structures, we followed the modified definitions from a previous study²⁴ and identified seven types: scrape, platform, cup, simple dome, dome with tunnel, primary cavity, and secondary cavity (Table2 and Fig.1a). Nests built inside cavities were classified as cavity nests, regardless of any additional structures (such as platforms, cups, or domes) constructed within the cavity.

Nest attachment refers to how nests are connected to supporting objects. We categorized the attachment types as basal, horizontally forked, lateral, and pensile attachment (Table3 and Fig.1b). Notably, we distinguished nests laterally attached to vertical objects (e.g. walls or stems) as a separate category from those supported by horizontally forked branches, as they likely involve different building techniques.

Certain nesting situations were not adequately represented by the predefined nest types. For species within the Megapodiidae family that construct mounds and use the solar or fermentation heat for egg incubation, we established a distinct category called “mound”. Obligate brood parasitic species which do not build their own nests but rely on other species to raise their young were classified separately as “parasite”. Note that the nest characterization in our dataset only covers natural environments and structures. We have not included artificial structures used for nest building due to the limited availability of comprehensive documentation in this regard.

Data sources

We gathered information on nest characteristics from various forms of sources, including text descriptions, photos, and videos. The primary source for a significant portion of the dataset was the Handbook of the Birds of the World (HBW) Alive, which is now integrated into the online platform Birds of the World²⁵. This comprehensive database provided extensive life history information for most bird species. We extracted nest-related information from the text descriptions in the breeding section of the species, including details on nest site characteristics, nest construction process, nest structure and size, nesting materials, supporting materials and the nest attachment mechanisms.

To supplement our characterization efforts, we also used alternative data sources, including (1) photos, videos, and references embedded or cited in the description of the bird species in HBW Alive (Birds of the World), (2) large online database managed by reputable organizations engaging in long-term bird data collection, including the Macaulay Library from The Cornell Lab of Ornithology (www.macaulaylibrary.org), National Audubon Society (www.audubon.org), WikiAves (www.wikiaves.com.br), and BirdLife Data Zone (https://www.datazone.birdlife.org), (3) other online data sources, including websites engaging in smaller-scale data collections, and informal sources such as personal blogposts, photos, and videos, and (4) published scientific literature on breeding behavior of the species, retrieved from Google Scholar using the scientific name of the species with keywords “nest” or “breeding”.

When the text descriptions of bird nests in HBW Alive (Birds of the World) were missing or incomplete, we turned to the alternative references mentioned above, following a prioritized order outlined in Table4. If nest information remained unavailable, we referred to species with similar nesting behavior, if indicated in the HBW Alive (Birds of the World) descriptions, and recorded the scientific name of the reference species. In the case of recently split species without their own information page in HBW Alive (Birds of the World), we referred to the species prior to the split.

Data extraction procedure

We obtained the list of the world’s bird species from HBW and BirdLife Taxonomic Checklist Version 5.0²⁶, selecting taxonomic entities that were recognized as species (BirdLife taxonomic treatment = R), resulting in a total of 11,158 candidate species for nest characterization. To enhance data integration across bird trait datasets, we included two species identifiers, SISRecID and Avibase ID, alongside the scientific name of each species. We also included the order, family, and common name for each species, facilitating convenient data processing tasks such as grouping and subsetting.

To code nest characteristics for each species, we created a spreadsheet with species as entities (rows) and the defined nest types (7 types of site, 7 types of structure, 4 types of attachment) as attributes (columns). Each data entry was assigned a value of 1 if the corresponding nest characteristic was observed in the species, or 0 if not observed. This approach allowed us to capture multiple nest types for species that exhibited more than one type of site, structure, or attachment, as described in the references. Mound-building species were assigned a value of 1 to the mound column. Brood parasitic species that do not build nests were assigned 1 to the parasite column and 0s to all other nest type columns. Several species in the Falconidae family that do not build nests but only use pre-existing nests from other bird species do not fall within any of the categories and were therefore assigned 0s to all nest type columns. When information was missing or insufficient for identifying the nest types, NAs were assigned to the respective columns.

Due to the extensive amount of information to be collected and verified, the characterization task spanned from October 2016 to September 2023 and involved six researchers. For each species, we documented the data sources associated with each nest trait, the name(s) of the researcher(s) responsible for the identification, and the reference period during which the data was collected. For data sourced from large online databases (coded D in Table4), we recorded the main website from which the species information can be searched with its scientific name. For data sourced from other online data sources (code O) or scientific literature (code L), we recorded the specific webpage or literature directly associated with the respective species. For data sourced from HBW Alive (Birds of the World) page of similar species (code S), we provided the scientific name of the corresponding similar species.

The nest trait dataset is available with three comma-separated values (CSV) files on Zenodo²⁷. The main file with the name NestTraits_v2.csv documents the nest traits of the world’s bird species. The supportive file named NestTraits_v2_metadata.csv includes the descriptions of columns and data entry codes used in the main file. The other supportive file named NestTraits_v2_ref.csv includes a list of references used to characterize nest traits in our dataset. We also present here the column descriptions in Table5.

Excluding the missing data, the presented dataset covers bird species from all 36 orders, more than 98% of the 244 families, more than 92% of the 2,379 genera, and over 81% of the 11,158 species (Table6). These species are well-distributed across the avian phylogenetic tree (Fig.2), and the dataset covers more than 71% of the species in each of the 36 orders, ensuring substantial coverage within various lineages.

The majority of species utilize vegetation as nesting sites. More than half (58%) of the species can nest in/on trees, and more than one third (39%) of the species can nest in/on non-tree vegetation. Apart from that, there is a considerable number of ground-nesting species (19%) and species that can nest in cliffs or banks (15%). The other types of sites, i.e., underground, termite or ant nests, and waterbodies, were used by a relatively small proportion of species (<3%). As for the nest structure, the most common type is the cup-shaped nest, which can be built by 38% of the species. Meanwhile, other nest structures, including dome, platform, scrape, and primary and secondary cavities, were all found in more than 7% of the species, revealing the diverse nest structures among species. Regarding nest attachment, basal attachment is the most common type and used by 86% of the bird species, with the other three types ranging only from 3% to 6%. The frequency distribution of each nest type can be found in Fig.3.

To minimize inconsistencies and potential errors in the characterizing process, we implemented several validation procedures. Firstly, when encountering ambiguous text description or atypical nest forms, two or more researchers reviewed and discussed the cases until a consensus was reached. This ensured that judgments were made collectively, reducing the likelihood of inconsistency. Secondly, we conducted random checks to validate the final results. We selected random species from each nest type category to check for correctness and consistency. If systematic errors were found associated with specific nest types, taxa, or researchers, we would review other relevant species to trace and correct the errors. Thirdly, we compiled the nest characteristics data into a site-structure-attachment combination occurrence table, focusing on rare or unusual combinations of nest type. We then revisit the data sources to verify the entries of these species. Fourthly, we summarized the distribution of nest types for each of the 35 non-passerine orders and 139 passerine families, and for species having nest types that were uncommon in their order or family, we verified the data entries for the species by revisiting the data sources. For families containing only one or very few species, all species were double-checked at least once. Among the total species examined, a minimum of 3,930 (35.2%) species were verified by two or more researchers across all trait entries, not including a larger number of species that were partially verified for specific nest traits.

We implemented measures to facilitate corrections and future maintenance of the dataset. For each species, we recorded the type of references used for trait identification for each species, which enabled verification in case of doubts. We also recorded the time period of data extraction, which can be used to prioritize the updating efforts when new information is available. Additionally, we recorded the names of the researchers responsible for identifying the traits of each species. This allows for efficient identification and correction of systematic errors made by specific individuals.

Taxonomic identifiers

The nest trait dataset provided several commonly used species identifiers to facilitate seamless referencing between different datasets, eliminating the complexities associated with cross-referencing across various species naming systems. The HBW-BirdLife version 5.0 checklist’s sequence number can be used to link to other species information within the original checklist, such as IUCN Red List category, synonyms, and subspecies. The SISRecID provides a means to connect with previous versions of HBW and HBW-BirdLife species checklists. This would be useful to link to datasets with earlier versions of nomenclature, which is used in many published datasets such as EltonTraits²³ and BirdLife International species distribution data²⁰. For example, a linkage between thecurrent dataset and species range maps from BirdLife International can provide intriguing geographical patterns presenting various opportunities for further research in avian ecology, biogeography, and species interactions (Fig.4). Additionally, the Avibase ID²⁸ enables linking to other taxonomies such as Clement/eBird taxonomy²⁹, and allows for tracking changes in the scientific names.

Filling in missing data

As nest characteristics often exhibit strong phylogenetic signals and are generally conserved within a genus, users have the option to supplement missing data by referring to information from species within the same genus. This approach can potentially increase species coverage from 80–82% in the current dataset to 98%. In situations where variations in nest types exist within a genus, it is up to the users to determine the protocol for filling in the traits of particular species. This may involve choosing the most commonly observed type, the strictly shared type, considering all possible types, or referencing data from the closest related species (if available), depending on the specific goals of the analysis. Similar procedures can be extended to higher taxonomic levels, such as the family or even order, to further increase species coverage.

Limitations

We acknowledge that the identification of nest traits is subject to several limitations and constraints. The reliance on text descriptions for identification introduces a degree of sensitivity to the perception and wording of the original describer of the nests. Ambiguity in the description can also add a level of subjectivity in the interpretation by our nest characterization team. In addition, for species with limited observation records, the nest description may be based on a single or very few observations, potentially limiting the comprehensive representation of nest traits. Conversely, species that have been extensively documented may exhibit a wider range of nest forms in the dataset. Due to these challenges, we recognize the potential for future updates to enhance the completeness and accuracy of the dataset as new information becomes available.

Authors and Affiliations

1. Biodiversity Research Center, Academia Sinica, Taipei, Taiwan

   Stephanie Yuan Chia,Yi-Ting Fang,Yi-Ting Su,Pei-Yu Tsai,Chia Hsieh,Chih-Ming Hung&Mao-Ning Tuanmu

2. Department of Biology, University of Maryland, College Park, Maryland, USA

   Stephanie Yuan Chia

3. Department of Life Sciences, National Cheng Kung University, Tainan, Taiwan

   Yi-Ting Su

4. Program in Ecology and Evolutionary Biology, BioSciences Department, Rice University, Houston, Texas, USA

   Chia Hsieh

5. Department of Mechanical Engineering, National Taiwan University, Taipei, Taiwan

   Shu-Han Tsao&Jia-Yang Juang

6. Program in Nanoengineering and Nanoscience, Graduate School of Advanced Technology, National Taiwan University, Taipei, Taiwan

   Jia-Yang Juang

Contributions

C.-M. Hung and M.-N. Tuanmu initially defined the characteristic types and refined them with S. Chia, Y.-T. Fang, P.-Y. Tsai, and C. Hsieh during the characterization process; S. Chia, Y.-T. Fang, Y.-T. Su, P.-Y. Tsai, C. Hsieh, and S.-H. Tsao characterized nest traits under the supervision of C.-M. Hung, J.-Y. Juang, and M.-N. Tuanmu; S. Chia, P.-Y. Tsai, and C. Hsieh performed the data validation; S. Chia and M.-N. Tuanmu led the writing with contributions from all the other authors.

Corresponding authors

Correspondence to Chih-Ming Hung or Mao-Ning Tuanmu.

Competing interests

The authors declare no competing interests.

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